PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01745.1.g00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 298aa    MW: 32241 Da    PI: 5.6373
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01745.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.2e-161562148
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    +g W++eEd++l d++ ++G g+W++ +++ g++R +k+c++rw +yl
  Zmw_sc01745.1.g00040.1.sm.mkhc 15 KGLWSPEEDQKLRDYILRYGHGCWSALPAKAGLNRNGKSCRLRWINYL 62
                                    678*******************************************97 PP

2Myb_DNA-binding53.74.7e-1769113248
                                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                     g +++eE+e    +++ lG++ W++Iar+++ gRt++++k++w++yl
  Zmw_sc01745.1.g00040.1.sm.mkhc  69 GMFSPEEEETVMSLHAALGNK-WSRIARHLP-GRTDNEVKNYWNSYL 113
                                     569******************.*********.*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.8471062IPR017930Myb domain
SuperFamilySSF466892.46E-2912109IPR009057Homeodomain-like
SMARTSM007171.5E-121464IPR001005SANT/Myb domain
PfamPF002494.1E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-211669IPR009057Homeodomain-like
CDDcd001671.02E-101862No hitNo description
PROSITE profilePS5129425.12363117IPR017930Myb domain
SMARTSM007176.3E-1467115IPR001005SANT/Myb domain
PfamPF002491.8E-1569113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2570116IPR009057Homeodomain-like
CDDcd001676.25E-1271113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGCKACEKPK PNYRKGLWSP EEDQKLRDYI LRYGHGCWSA LPAKAGLNRN GKSCRLRWIN  60
YLRPGLKHGM FSPEEEETVM SLHAALGNKW SRIARHLPGR TDNEVKNYWN SYLKKRVEGK  120
EAGPSSPAPT ATNSAADSVD DSNQSVKPGA DSGSSEPRET SSVDSSCLTD PKPAAACRPH  180
APVAPKVMFE DWLDMDMDYI IRQVAAAPGL ESAGAVGASA SPGDQHQVLS QGSVQQQNQQ  240
GDGPCGVDVS SMSLHGFGDG GAGCWEFQEQ FESLADQMPT AGVFCDLLTM TEFFAGLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27111183109B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953256.11e-154PREDICTED: myb-related protein Myb4
TrEMBLK3YUK11e-153K3YUK1_SETIT; Uncharacterized protein
STRINGSi017947m1e-153(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109